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Diffstat (limited to 'unfinished/openmodeller.spec')
| -rw-r--r-- | unfinished/openmodeller.spec | 169 |
1 files changed, 169 insertions, 0 deletions
diff --git a/unfinished/openmodeller.spec b/unfinished/openmodeller.spec new file mode 100644 index 0000000..b762b39 --- /dev/null +++ b/unfinished/openmodeller.spec @@ -0,0 +1,169 @@ +%if ! (0%{?fedora} > 12 || 0%{?rhel} > 5) +%{!?python_sitearch: %global python_sitearch %(%{__python} -c "from distutils.sysconfig import get_python_lib; print(get_python_lib(1))")} +%endif + +Name: openmodeller +Version: 1.1.0 +Release: 1%{?dist} +Summary: Fundamental niche modeling library + +Group: System Environment/Libraries +License: GPLv2+ +URL: http://openmodeller.sourceforge.net/ +Source0: http://downloads.sourceforge.net/%{name}/lib%{name}-src-%{version}.tar.bz2 +#Cmake and Python script taken from QGIS +Source1: FindPythonLibs.cmake +Source2: FindLibPython.py + +#Taken from http://wush.net/trac/sehenley/browser/simulator/trunk/vendor/cmake/Modules/FindSWIG.cmake?rev=1306 +Source3: FindSWIG.cmake + +#Allow the find Cmake find script to find OpenMPI +#Patch0: %{name}_mpi.patch +Patch1: %{name}-python-sitedir.patch +BuildRoot: %{_tmppath}/%{name}-%{version}-%{release}-root-%(%{__id_u} -n) + +BuildRequires: gdal-devel +BuildRequires: swig +BuildRequires: sqlite-devel +BuildRequires: proj-devel +BuildRequires: expat-devel +BuildRequires: cmake + +BuildRequires: libcurl-devel +BuildRequires: gsl-devel +BuildRequires: libX11-devel +BuildRequires: cxxtest + +# We don't want to provide private python extension libs +%{?filter_setup: +%filter_provides_in %{python_sitearch}/.*\.so$ +%filter_setup +} + +%description +OpenModeller is an open source C++ library to determine potential +distribution in environment and geographic space. Models are generated +by algorithms that receive as input a set of occurrence points +(latitude/longitude/abundance) and a set of raster files with environment +data. Models can then be projected to generate distribution maps. +Available algorithms include Bioclim, GARP Best Subsets, Support Vector +Machines, Climate Space Model, Environmental Distance, AquaMaps and +Maximum Entropy. The library uses GDAL to read different raster formats +and proj4 to convert between different coordinate systems and projections. + + +%package devel +Summary: Development Libraries for %{name} +Group: Development/Libraries +Requires: %{name} = %{version}-%{release} + +%description devel +Development package for %{name} including header files. + +%package python +Summary: Python bindings for %{name} +Group: Development/Libraries +Requires: %{name} = %{version}-%{release} + +%description python +Python bindings for %{name}. + +#Im test-Verzeichnis sind kompatible Lizenzen, womöglich aber ein Bundle und falsche FSF-Adressen + +%prep +%setup -q -n lib%{name}-src-%{version} + +#SOAP? +#%patch0 -p1 -b .mpi +%patch1 -p1 -b .python-sitedir + +install -pm 644 %{SOURCE1} cmake +install -pm 644 %{SOURCE2} cmake +install -pm 644 %{SOURCE3} cmake + +# Delete invalid first lines in man pages +pushd src/console/man + for file in *; do + sed -i '1d' $file + done +popd + + +#Correct path for 64 bit libraries +#Da sollte man eher prefix schreiben +if [ "%{_libdir}" = "/usr/lib64" ] ; then + sed -i 's/\lib/\/lib64/g' CMakeLists.txt + sed -i 's/LIBRARY DESTINATION lib/LIBRARY DESTINATION lib64/g' src/%{name}/CMakeLists.txt +fi +#Correct installation directory for man pages +sed -i 's/\(man\/man1\)/share\/\1/g' src/console/CMakeLists.txt +#-Werror cancels compilation +#sed -i '/ADD_DEFINITIONS( -Wall -Werror )/d' CMakeLists.txt +#OM_CTEST + +#Correct permissions of source files +chmod 644 src/%{name}/*.cpp src/algorithms/enfa/*.cpp src/algorithms/enfa/*.hh + +#Change encoding to UTF-8 +iconv -f iso8859-1 -t utf-8 AUTHORS > AUTHORS.conv && mv AUTHORS.conv AUTHORS +pushd src/console/man + iconv -f iso8859-1 -t utf-8 om_niche.1 > om_niche.1.conv && mv om_niche.1.conv om_niche.1 + iconv -f iso8859-1 -t utf-8 om_console.1 > om_console.1.conv && mv om_console.1.conv om_console.1 +popd +%build +# Upstream turns off pedantic as well in their RPM +# MPI support is not ready upstream +%cmake -DCMAKE_INSTALL_PREFIX:PATH=%{_prefix} \ + -DCMAKE_SKIP_RPATH:BOOL=ON \ + -DPEDANTIC:BOOL=OFF \ + -DOM_BUILD_SERVICE:BOOL=ON \ + -DOM_CTEST:BOOL=ON \ + -DOM_BUILD_BINDINGS:BOOL=ON \ + -DGDAL_LIBRARY:PATH=%{_libdir}/libgdal.so + +make %{?_smp_mflags} +# Pluginpfad ist schlecht +#Doxygen + #-DLIBRARY_OUTPUT_PATH=%{_libdir}/%{name} \ -- Wird nicht perfekt verwendet + #-DOM_CTEST:BOOL=ON \ +#Bei Algorithms könnte ein Problem sein +#Installationspfad +#Beispieldaten +%install +rm -rf %{buildroot} +make install DESTDIR=%{buildroot} + +%check +#TEST + +%clean +rm -rf %{buildroot} + +#pkg-config? +%post -p /sbin/ldconfig + +%postun -p /sbin/ldconfig + +%files +%defattr(-,root,root,-) +%doc AUTHORS COPYING.txt ChangeLog README.txt +%config(noreplace) %{_sysconfdir}/%{name} +%{_bindir}/* +%{_libdir}/%{name} +%{_libdir}/lib%{name}.so +%{_mandir}/man1/* +%{_datadir}/%{name} + +%files devel +%defattr(-,root,root,-) +%{_includedir}/%{name} + +%files python +%defattr(-,root,root,-) +%{python_sitearch}/om.py* +%{python_sitearch}/_om.so + +%changelog +* Sun Jan 23 2011 Volker Fröhlich <volker27@gmx.at> 1.1.0-1 +- Initial packaging for Fedora |