Update codan plugins to HEAD.

* org.eclipse.cdt.codan.checkers.ui: Updated.
* org.eclipse.cdt.codan.checkers: Updated.
* org.eclipse.cdt.codan.core: Updated.
* org.eclipse.cdt.codan.ui: Updated.

24 files changed, 199 insertions, 48 deletions

diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Entries b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Entries
index fec4197..d3c5192 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Entries
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Entries
@@ -1,6 +1,5 @@
 /CodanApplication.java/1.2/Sat Aug 22 21:16:48 2009//
 /CodanCorePlugin.java/1.3/Sat Aug 22 21:16:48 2009//
-/CodanPreferencesLoader.java/1.1/Sat Aug 22 21:16:49 2009//
 /CodanRuntime.java/1.1/Sat Aug 22 21:16:48 2009//
 /PreferenceConstants.java/1.2/Sat Apr 18 04:01:43 2009//
 D/builder////
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/AbstractIndexAstChecker.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/AbstractIndexAstChecker.java
index 2c87b07..d805f2f 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/AbstractIndexAstChecker.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/AbstractIndexAstChecker.java
@@ -85,12 +85,18 @@ public abstract class AbstractIndexAstChecker extends AbstractChecker implements
 		if (astFile == null) {
 			astFile = file;
 		}
-		getProblemReporter().reportProblem(
-				id,
-				new ProblemLocation(astFile, astLocation
-						.getStartingLineNumber()), message);
+		ProblemLocation loc;
+		if (astLocation.getStartingLineNumber() == astLocation
+				.getEndingLineNumber())
+			loc = new ProblemLocation(astFile, astLocation.getNodeOffset(),
+					astLocation.getNodeOffset() + astLocation.getNodeLength());
+		else
+			loc = new ProblemLocation(astFile, astLocation
+					.getStartingLineNumber());
+		getProblemReporter().reportProblem(id, loc, message);
 	}
 
+	@Override
 	public boolean runInEditor() {
 		return true;
 	}
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Entries b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Entries
index 736d312..8635b9d 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Entries
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Entries
@@ -1,17 +1,16 @@
 /AbstractChecker.java/1.4/Sat Aug 22 21:31:29 2009//
-/AbstractIndexAstChecker.java/1.5/Sat Aug 22 21:31:29 2009//
+/AbstractIndexAstChecker.java/1.6/Wed Dec 16 21:48:48 2009//
 /CodanSeverity.java/1.2/Wed Apr 22 01:26:56 2009//
 /ICAstChecker.java/1.1/Thu Apr  9 12:46:50 2009//
-/IChecker.java/1.2/Sat Aug 22 21:31:29 2009//
+/IChecker.java/1.3/Wed Dec 16 21:48:48 2009//
 /ICheckersRegistry.java/1.1/Sat Aug 22 21:16:48 2009//
 /ICodanAstReconciler.java/1.1/Sat Aug 22 21:16:48 2009//
 /ICodanBuilder.java/1.1/Sat Aug 22 21:16:48 2009//
-/IProblem.java/1.3/Sat Aug 22 21:16:48 2009//
-/IProblemCategory.java/1.2/Thu Apr 16 01:46:57 2009//
-/IProblemElement.java/1.1/Thu Apr 16 01:46:57 2009//
+/IProblem.java/1.4/Wed Dec 16 21:48:48 2009//
+/IProblemCategory.java/1.3/Wed Dec 16 21:48:48 2009//
+/IProblemElement.java/1.2/Wed Dec 16 21:48:48 2009//
 /IProblemLocation.java/1.1/Sat Aug 22 21:16:48 2009//
-/IProblemProfile.java/1.3/Sat May  9 01:54:38 2009//
-/IProblemReporter.java/1.1/Sat Aug 22 21:16:48 2009//
+/IProblemProfile.java/1.4/Wed Dec 16 21:48:48 2009//
+/IProblemReporter.java/1.2/Wed Dec 16 21:48:48 2009//
 /ProblemLocation.java/1.1/Sat Aug 22 21:16:48 2009//
-/ProblemProfile.java/1.4/Sat Aug 22 21:16:48 2009//
 D
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IChecker.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IChecker.java
index 4f995db..60f7cb2 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IChecker.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IChecker.java
@@ -12,9 +12,23 @@ package org.eclipse.cdt.codan.core.model;
 
 import org.eclipse.core.resources.IResource;
 
+/**
+ * Interface that checker must implement. CDT Checker must be able to process a resource.
+ */
 public interface IChecker {
-	public boolean processResource(IResource resource);
+	/**
+	 * Main method that checker should implement that actually detects errors
+	 * @param resource - resource to run on
+	 * @return true if need to traverse children
+	 */
+	boolean processResource(IResource resource);
 
+	/**
+	 * Implement this method to trim down type of resource you are interested in,
+	 * usually it will be c/c++ files only
+	 * @param resource
+	 * @return
+	 */
 	boolean enabledInContext(IResource resource);
 
 	/**
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblem.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblem.java
index 52cfff2..bbab313 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblem.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblem.java
@@ -12,15 +12,38 @@ package org.eclipse.cdt.codan.core.model;
 
 import java.util.Collection;
 
+/**
+ * Interface representing code analysis problem
+ *
+ */
 public interface IProblem extends IProblemElement {
+	/**
+	 * Name of the problem - user visible "title", not the message
+	 */
 	String getName();
 
+	/**
+	 * Unique problem id. Should be qualified by plugin name to maintain uniqueness. 
+	 * @return
+	 */
 	String getId();
 
+	/**
+	 * Is enabled in current context (usually within profile)
+	 * @return true if enabled
+	 */
 	boolean isEnabled();
 
+	/**
+	 * Get current severity
+	 * @return severity
+	 */
 	CodanSeverity getSeverity();
 
+	/**
+	 * Message pattern, java patter like 'Variable {0} is never used here'
+	 * @return pattern 
+	 */
 	String getMessagePattern();
 
 	void setSeverity(CodanSeverity sev);
@@ -31,6 +54,11 @@ public interface IProblem extends IProblemElement {
 
 	public void setProperty(Object key, Object value);
 
+	/**
+	 * Get custom property
+	 * @param property name
+	 * @return property object
+	 */
 	public Object getProperty(Object key);
 
 	public Collection<Object> getPropertyKeys();
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemCategory.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemCategory.java
index 45a62a0..cd3de3a 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemCategory.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemCategory.java
@@ -10,20 +10,37 @@
  *******************************************************************************/
 package org.eclipse.cdt.codan.core.model;
 
+/**
+ * Problem category
+ *
+ */
 public interface IProblemCategory extends IProblemElement {
+	/**
+	 * Category name
+	 */
 	String getName();
 
+	/**
+	 * Unique category id
+	 * @return id
+	 */
 	String getId();
 
-	Object[] getChildren();
+	/**
+	 * Category children (other categories or problems)
+	 * @return
+	 */
+	IProblemElement[] getChildren();
 
 	/**
+	 * Find problem by id within children recursively
 	 * @param id
 	 * @return
 	 */
 	IProblem findProblem(String id);
 
 	/**
+	 * Find category by id within children recursively
 	 * @param id
 	 * @return
 	 */
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemElement.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemElement.java
index b9f7fb8..318f304 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemElement.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemElement.java
@@ -11,7 +11,7 @@
 package org.eclipse.cdt.codan.core.model;
 
 /**
- * @author Alena
+ * Problem category or problem 
  * 
  */
 public interface IProblemElement extends Cloneable {
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemProfile.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemProfile.java
index 9dc465e..896eb10 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemProfile.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemProfile.java
@@ -11,8 +11,10 @@
 package org.eclipse.cdt.codan.core.model;
 
 /**
- * Problem Profile contains tree of categories and problems. Profiles can have
- * different categories and different problems set, problems with the same id
+ * Problem Profile contains tree of categories and problems. For user profile is quick way
+ * to switch between problems sets depends on task he is doing (i.e. find real bugs, vs doing code style report)
+ * User can set different profiles in different projects. 
+ * Profiles can have different categories and different problems set, problems with the same id
  * can have different severities/enablement in different profiles. To obtain
  * profile use class {@link CheckersRegisry#getResourceProfile,
  * CheckersRegisry#getDefaultProfile() or CheckersRegisry#getWorkspaceProfile()}
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemReporter.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemReporter.java
index 814cc40..059f155 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemReporter.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/IProblemReporter.java
@@ -16,6 +16,7 @@ package org.eclipse.cdt.codan.core.model;
  *
  */
 public interface IProblemReporter {
+	public static final String GENERIC_CODE_ANALYSIS_MARKER_TYPE = "org.eclipse.cdt.codan.core.codanProblem";
 	/**
 	 * Report a problem with "problemId" id on location determined by "loc", 
 	 * using problem specific error message customised by args.
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Entries b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Entries
index 74cd7a6..49bf43c 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Entries
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Entries
@@ -1,4 +1,5 @@
-/CheckersRegisry.java/1.1/Sat Aug 22 21:16:49 2009//
-/CodanBuilder.java/1.2/Sat Aug 22 21:31:29 2009//
+/CheckersRegisry.java/1.3/Wed Dec 16 21:48:48 2009//
+/CodanBuilder.java/1.3/Wed Dec 16 21:48:48 2009//
+/CodanPreferencesLoader.java/1.1/Wed Sep 23 23:29:36 2009//
 /CodeAnlysisNature.java/1.1/Sat Aug 22 21:16:49 2009//
 D/model////
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CheckersRegisry.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CheckersRegisry.java
index 82ace80..5661622 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CheckersRegisry.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CheckersRegisry.java
@@ -16,16 +16,15 @@ import java.util.HashMap;
 import java.util.Iterator;
 
 import org.eclipse.cdt.codan.core.CodanCorePlugin;
-import org.eclipse.cdt.codan.core.CodanPreferencesLoader;
 import org.eclipse.cdt.codan.core.PreferenceConstants;
 import org.eclipse.cdt.codan.core.model.IChecker;
 import org.eclipse.cdt.codan.core.model.ICheckersRegistry;
 import org.eclipse.cdt.codan.core.model.IProblem;
 import org.eclipse.cdt.codan.core.model.IProblemCategory;
 import org.eclipse.cdt.codan.core.model.IProblemProfile;
-import org.eclipse.cdt.codan.core.model.ProblemProfile;
 import org.eclipse.cdt.codan.internal.core.model.CodanProblem;
 import org.eclipse.cdt.codan.internal.core.model.CodanProblemCategory;
+import org.eclipse.cdt.codan.internal.core.model.ProblemProfile;
 import org.eclipse.core.resources.IProject;
 import org.eclipse.core.resources.IResource;
 import org.eclipse.core.resources.ProjectScope;
@@ -45,6 +44,7 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 	private Collection<IChecker> checkers = new ArrayList<IChecker>();
 	private static CheckersRegisry instance;
 	private HashMap<Object, IProblemProfile> profiles = new HashMap<Object, IProblemProfile>();
+	private HashMap<IChecker, Collection<IProblem>> problemList = new HashMap<IChecker, Collection<IProblem>>();
 
 	private CheckersRegisry() {
 		instance = this;
@@ -136,7 +136,9 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 					}
 				}
 				if (!hasRef) {
-					addProblem(new CodanProblem(id, name), null);
+					CodanProblem p = new CodanProblem(id, name);
+					addProblem(p, null);
+					addRefProblem(checkerObj, p);
 				}
 			}
 		} catch (Exception e) {
@@ -184,7 +186,9 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 		return elementValue;
 	}
 
-	/* (non-Javadoc)
+	/*
+	 * (non-Javadoc)
+	 * 
 	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#iterator()
 	 */
 	public Iterator<IChecker> iterator() {
@@ -197,15 +201,23 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 		return instance;
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#addChecker(org.eclipse.cdt.codan.core.model.IChecker)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#addChecker(org.eclipse
+	 * .cdt.codan.core.model.IChecker)
 	 */
 	public void addChecker(IChecker checker) {
 		checkers.add(checker);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#addProblem(org.eclipse.cdt.codan.core.model.IProblem, java.lang.String)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#addProblem(org.eclipse
+	 * .cdt.codan.core.model.IProblem, java.lang.String)
 	 */
 	public void addProblem(IProblem p, String category) {
 		IProblemCategory cat = getDefaultProfile().findCategory(category);
@@ -214,8 +226,12 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 		((ProblemProfile) getDefaultProfile()).addProblem(p, cat);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#addCategory(org.eclipse.cdt.codan.core.model.IProblemCategory, java.lang.String)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#addCategory(org.eclipse
+	 * .cdt.codan.core.model.IProblemCategory, java.lang.String)
 	 */
 	public void addCategory(IProblemCategory p, String category) {
 		IProblemCategory cat = getDefaultProfile().findCategory(category);
@@ -224,21 +240,46 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 		((ProblemProfile) getDefaultProfile()).addCategory(p, cat);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#addRefProblem(org.eclipse.cdt.codan.core.model.IChecker, org.eclipse.cdt.codan.core.model.IProblem)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#addRefProblem(org.
+	 * eclipse.cdt.codan.core.model.IChecker,
+	 * org.eclipse.cdt.codan.core.model.IProblem)
 	 */
 	public void addRefProblem(IChecker c, IProblem p) {
+		Collection<IProblem> plist = problemList.get(c);
+		if (plist == null) {
+			plist = new ArrayList<IProblem>();
+			problemList.put(c, plist);
+		}
+		plist.add(p);
+	}
+	
+	/**
+	 * Returns list of problems registered for given checker
+	 * @return collection of problems or null
+	 */
+	public Collection<IProblem> getRefProblems(IChecker checker) {
+		return problemList.get(checker);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#getDefaultProfile()
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#getDefaultProfile()
 	 */
 	public IProblemProfile getDefaultProfile() {
 		return profiles.get(DEFAULT);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#getWorkspaceProfile()
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#getWorkspaceProfile()
 	 */
 	public IProblemProfile getWorkspaceProfile() {
 		IProblemProfile wp = profiles.get(ResourcesPlugin.getWorkspace());
@@ -262,8 +303,12 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 			profiles.put(element, profile);
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#getResourceProfile(org.eclipse.core.resources.IResource)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @see
+	 * org.eclipse.cdt.codan.core.model.ICheckersRegistry#getResourceProfile
+	 * (org.eclipse.core.resources.IResource)
 	 */
 	public IProblemProfile getResourceProfile(IResource element) {
 		IProblemProfile prof = profiles.get(element);
@@ -296,8 +341,11 @@ public class CheckersRegisry implements Iterable<IChecker>, ICheckersRegistry {
 		return prof;
 	}
 
-	/* (non-Javadoc)
-	 * @see org.eclipse.cdt.codan.core.model.ICheckersRegistry#getResourceProfileWorkingCopy(org.eclipse.core.resources.IResource)
+	/*
+	 * (non-Javadoc)
+	 * 
+	 * @seeorg.eclipse.cdt.codan.core.model.ICheckersRegistry#
+	 * getResourceProfileWorkingCopy(org.eclipse.core.resources.IResource)
 	 */
 	public IProblemProfile getResourceProfileWorkingCopy(IResource element) {
 		if (element instanceof IProject) {
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanBuilder.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanBuilder.java
index 7d58351..56916b8 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanBuilder.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanBuilder.java
@@ -12,6 +12,8 @@ package org.eclipse.cdt.codan.internal.core;
 
 import java.io.File;
 import java.net.URI;
+import java.util.Collection;
+import java.util.Iterator;
 import java.util.Map;
 
 import org.eclipse.cdt.codan.core.CodanCorePlugin;
@@ -20,6 +22,8 @@ import org.eclipse.cdt.codan.core.model.ICAstChecker;
 import org.eclipse.cdt.codan.core.model.IChecker;
 import org.eclipse.cdt.codan.core.model.ICodanAstReconciler;
 import org.eclipse.cdt.codan.core.model.ICodanBuilder;
+import org.eclipse.cdt.codan.core.model.IProblem;
+import org.eclipse.cdt.codan.core.model.IProblemProfile;
 import org.eclipse.cdt.codan.core.model.IProblemReporter;
 import org.eclipse.cdt.codan.internal.core.model.CodanMarkerProblemReporter;
 import org.eclipse.cdt.core.dom.ast.IASTTranslationUnit;
@@ -122,6 +126,8 @@ public class CodanBuilder extends IncrementalProjectBuilder implements
 				boolean run = false;
 				if (checker.enabledInContext(resource))
 					run = true;
+				if (areProblemsForCheckerEnabled(checker, resource))
+					run = true;
 				if (run)
 					checker.processResource(resource);
 			} catch (Throwable e) {
@@ -161,6 +167,9 @@ public class CodanBuilder extends IncrementalProjectBuilder implements
 					boolean run = false;
 					if (checker.enabledInContext(resource))
 						run = true;
+					if (areProblemsForCheckerEnabled(checker, resource)) {
+						run = true;
+					}
 					if (run && checker instanceof ICAstChecker
 							&& checker.runInEditor())
 						((ICAstChecker) checker).processAst(ast);
@@ -171,6 +180,30 @@ public class CodanBuilder extends IncrementalProjectBuilder implements
 		}
 	}
 
+	/**
+	 * @param checker
+	 * @param resource
+	 * @return
+	 */
+	private boolean areProblemsForCheckerEnabled(IChecker checker,
+			IResource resource) {
+		IProblemProfile resourceProfile = CheckersRegisry.getInstance()
+				.getResourceProfile(resource);
+		Collection<IProblem> refProblems = CheckersRegisry.getInstance()
+				.getRefProblems(checker);
+		for (Iterator iterator = refProblems.iterator(); iterator.hasNext();) {
+			IProblem p = (IProblem) iterator.next();
+			// we need to check problem enablement in particular profile
+			IProblem problem = resourceProfile.findProblem(p.getId());
+			if (problem == null)
+				throw new IllegalArgumentException("Id is not registered");
+			if (problem.isEnabled())
+				return true;
+		}
+		// no problem is enabled for this checker, skip the checker
+		return false;
+	}
+
 	protected void fullBuild(final IProgressMonitor monitor)
 			throws CoreException {
 		try {
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CodanPreferencesLoader.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanPreferencesLoader.java
index 6fd6318..bafff9a 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/CodanPreferencesLoader.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/CodanPreferencesLoader.java
@@ -8,7 +8,7 @@
  * Contributors:
  *    Alena Laskavaia  - initial API and implementation
  *******************************************************************************/
-package org.eclipse.cdt.codan.core;
+package org.eclipse.cdt.codan.internal.core;
 
 import org.eclipse.cdt.codan.core.model.CodanSeverity;
 import org.eclipse.cdt.codan.core.model.IProblem;
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Entries b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Entries
index cf1f6cc..5f7a029 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Entries
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Entries
@@ -1,4 +1,5 @@
-/CodanMarkerProblemReporter.java/1.1/Sat Aug 22 21:16:48 2009//
+/CodanMarkerProblemReporter.java/1.2/Wed Dec 16 21:48:48 2009//
 /CodanProblem.java/1.1/Sat Aug 22 21:16:48 2009//
-/CodanProblemCategory.java/1.1/Sat Aug 22 21:16:48 2009//
+/CodanProblemCategory.java/1.2/Wed Dec 16 21:48:48 2009//
+/ProblemProfile.java/1.1/Wed Sep 23 23:29:36 2009//
 D
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Template b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Template
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CVS/Template
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanMarkerProblemReporter.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanMarkerProblemReporter.java
index ebf00c9..a4599c5 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanMarkerProblemReporter.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanMarkerProblemReporter.java
@@ -23,7 +23,7 @@ import org.eclipse.core.resources.ResourcesPlugin;
 import org.eclipse.core.runtime.CoreException;
 
 public class CodanMarkerProblemReporter implements IProblemReporter {
-	public static final String GENERIC_CODE_ANALYSIS_MARKER_TYPE = "org.eclipse.cdt.codan.core.codanProblem";
+
 
 	/*
 	 * (non-Javadoc)
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanProblemCategory.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanProblemCategory.java
index 289e0fd..fc63480 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanProblemCategory.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/CodanProblemCategory.java
@@ -40,8 +40,8 @@ public class CodanProblemCategory implements IProblemCategory, Cloneable {
 		return name;
 	}
 
-	public Object[] getChildren() {
-		return list.toArray();
+	public IProblemElement[] getChildren() {
+		return (IProblemElement[]) list.toArray(new IProblemElement[list.size()]);
 	}
 
 	public void addChild(IProblemElement p) {
diff --git a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/ProblemProfile.java b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/ProblemProfile.java
index ae90e76..d2330f1 100644
--- a/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/core/model/ProblemProfile.java
+++ b/org.eclipse.cdt.codan.core/src/org/eclipse/cdt/codan/internal/core/model/ProblemProfile.java
@@ -8,12 +8,14 @@
  * Contributors:
  *    Alena Laskavaia  - initial API and implementation
  *******************************************************************************/
-package org.eclipse.cdt.codan.core.model;
+package org.eclipse.cdt.codan.internal.core.model;
 
 import java.util.ArrayList;
 import java.util.Collection;
 
-import org.eclipse.cdt.codan.internal.core.model.CodanProblemCategory;
+import org.eclipse.cdt.codan.core.model.IProblem;
+import org.eclipse.cdt.codan.core.model.IProblemCategory;
+import org.eclipse.cdt.codan.core.model.IProblemProfile;
 
 /**
  * @author Alena