+ exec
+ rm -rf /rpmbuild
+ mkdir -p /rpmbuild
+ su -c 'rpmbuild -ba /builddir/build/SPECS/glimmer.spec            --define "debug_package %{nil}"            --undefine _annotated_build            --define "_missing_doc_files_terminate_build %{nil}"            --define "_emacs_sitestartdir /usr/share/emacs/site-lisp/site-start.d"            --define "_emacs_sitelispdir /usr/share/emacs/site-lisp"            --nocheck   ' mockbuild
warning: bogus date in %changelog: Tue Jan 16 2008 Christian Iseli <Christian.Iseli@licr.org> - 3.02-3
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.UxNnhY
+ umask 022
+ cd /builddir/build/BUILD
+ cd /builddir/build/BUILD
+ rm -rf glimmer3.02
+ /usr/bin/tar -xof -
+ /usr/bin/gzip -dc /builddir/build/SOURCES/glimmer302b.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd glimmer3.02
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ rm -f sample-run/g3-from-scratch.csh sample-run/g3-from-training.csh sample-run/g3-iterated.csh
+ sed -i s+/fs/szgenefinding/Glimmer3/bin+/usr/libexec/glimmer3+ scripts/g3-from-scratch.csh scripts/g3-from-training.csh scripts/g3-iterated.csh
+ sed -i s+/fs/szgenefinding/Glimmer3/scripts+/usr/share/glimmer3+ scripts/g3-from-scratch.csh scripts/g3-from-training.csh scripts/g3-iterated.csh
+ sed -i s+/nfshomes/adelcher/bin/elph+/usr/bin/elph+ scripts/g3-from-scratch.csh scripts/g3-from-training.csh scripts/g3-iterated.csh
+ sed -i 's/@ if/if/' src/c_make.gen
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.LVSDMx
+ umask 022
+ cd /builddir/build/BUILD
+ cd glimmer3.02
+ make -C src -j4 'CXXFLAGS=-O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 '
make: Entering directory '/builddir/build/BUILD/glimmer3.02/src'
* Make Target is  all
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Common   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Common'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e gene.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc gene.cc \
    | sed '\''s/gene\\.o[ :]*/& gene.d/g'\'' > gene.d' ; \
        fi ;
if [ -e fasta.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc fasta.cc \
    | sed '\''s/fasta\\.o[ :]*/& fasta.d/g'\'' > fasta.d' ; \
        fi ;
if [ -e delcher.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc delcher.cc \
    | sed '\''s/delcher\\.o[ :]*/& delcher.d/g'\'' > delcher.d' ; \
        fi ;
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  delcher.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e delcher.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/delcher.o delcher.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" delcher.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  fasta.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e fasta.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/fasta.o fasta.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" fasta.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  gene.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e gene.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/gene.o gene.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" gene.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
gene.cc: In member function 'bool PWM_t::Read(FILE*)':
gene.cc:318:11: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
    fscanf (fp, "%d", & width);
    ~~~~~~~^~~~~~~~~~~~~~~~~~~
gene.cc:331:14: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
       fscanf (fp, "%s", tag);   // skip tag in first column
       ~~~~~~~^~~~~~~~~~~~~~~
gene.cc:334:17: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result]
          fscanf (fp, "%lf", & x);
          ~~~~~~~^~~~~~~~~~~~~~~~
gene.cc: In function 'int Read_String(FILE*, char*&, long int&, char*, int)':
gene.cc:847:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets (Line, MAX_LINE, fp);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
###################  libGLMcommon.a #####################
ar: creating /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a
a - delcher.o
a - fasta.o
a - gene.o
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Common'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/ICM   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e score-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc score-fixed.cc \
    | sed '\''s/score-fixed\\.o[ :]*/& score-fixed.d/g'\'' > score-fixed.d' ; \
        fi ;
if [ -e build-fixed.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc build-fixed.cc \
    | sed '\''s/build-fixed\\.o[ :]*/& build-fixed.d/g'\'' > build-fixed.d' ; \
        fi ;
if [ -e build-icm.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc build-icm.cc \
    | sed '\''s/build-icm\\.o[ :]*/& build-icm.d/g'\'' > build-icm.d' ; \
        fi ;
if [ -e icm.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc icm.cc \
    | sed '\''s/icm\\.o[ :]*/& icm.d/g'\'' > icm.d' ; \
        fi ;
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  icm.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e icm.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/icm.o icm.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" icm.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
icm.cc: In member function 'void Fixed_Length_ICM_t::read(const char*)':
icm.cc:1489:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread (line, sizeof (char), ID_STRING_LEN, fp);    // skip the text header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
icm.cc:1517:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fread (permutation, sizeof (int), length, fp);
    ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  build-icm.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e build-icm.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/build-icm.o build-icm.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" build-icm.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  build-fixed.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e build-fixed.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/build-fixed.o build-fixed.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" build-fixed.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  score-fixed.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e score-fixed.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/score-fixed.o score-fixed.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" score-fixed.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
###################  libGLMicm.a #####################
ar: creating /builddir/build/BUILD/glimmer3.02/lib/libGLMicm.a
a - icm.o
a - build-icm.o
a - build-fixed.o
a - score-fixed.o
++++++++++++++++++++  build-icm ++++++++++++++++++++++
if [ -z "build-icm.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/build-icm -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-icm.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/build-icm; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/build-icm -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-icm.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/build-icm; fi; \
fi ;
++++++++++++++++++++  build-fixed ++++++++++++++++++++++
if [ -z "build-fixed.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/build-fixed -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-fixed.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/build-fixed; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/build-fixed -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib build-fixed.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/build-fixed; fi; \
fi ;
++++++++++++++++++++  score-fixed ++++++++++++++++++++++
if [ -z "score-fixed.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/score-fixed -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib score-fixed.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/score-fixed; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/score-fixed -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib score-fixed.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        -lGLMicm ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/score-fixed; fi; \
fi ;
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Glimmer   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e test.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc test.cc \
    | sed '\''s/test\\.o[ :]*/& test.d/g'\'' > test.d' ; \
        fi ;
if [ -e long-orfs.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc long-orfs.cc \
    | sed '\''s/long-orfs\\.o[ :]*/& long-orfs.d/g'\'' > long-orfs.d' ; \
        fi ;
if [ -e glimmer3.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc glimmer3.cc \
    | sed '\''s/glimmer3\\.o[ :]*/& glimmer3.d/g'\'' > glimmer3.d' ; \
        fi ;
if [ -e anomaly.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc anomaly.cc \
    | sed '\''s/anomaly\\.o[ :]*/& anomaly.d/g'\'' > anomaly.d' ; \
        fi ;
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  anomaly.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e anomaly.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/anomaly.o anomaly.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" anomaly.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
anomaly.cc: In function 'int main(int, char**)':
anomaly.cc:82:27: warning: suggest parentheses around '&&' within '||' [-Wparentheses]
          if  (Start < End && End - Start <= Len / 2 || Start - End > Len / 2)
               ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  glimmer3.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e glimmer3.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/glimmer3.o glimmer3.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" glimmer3.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
glimmer3.cc: In function 'void Score_Orfs(std::vector<Orf_t>&, std::vector<Gene_t>&, FILE*)':
glimmer3.cc:2861:20: warning: variable 'max_rate' set but not used [-Wunused-but-set-variable]
       double  max, max_rate;
                    ^~~~~~~~
glimmer3.cc:2867:23: warning: variable 'max_j' set but not used [-Wunused-but-set-variable]
       int  fr, frame, max_j, orf_start, frame_score;
                       ^~~~~
glimmer3.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
glimmer3.cc:2608:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
glimmer3.cc: In function 'void Score_Orfs(std::vector<Orf_t>&, std::vector<Gene_t>&, FILE*)':
glimmer3.cc:3010:26: warning: 'first_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
       gene_score = 100.0 * best_score / (best_j - 2);
                    ~~~~~~^~~~~~~~~~~~
glimmer3.cc: In function 'int main(int, char**)':
glimmer3.cc:3441:32: warning: 'rev_start' may be used uninitialized in this function [-Wmaybe-uninitialized]
            gene . Set_Gene_Len (rev_start - p -> pos);
            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
glimmer3.cc:3412:21: note: 'rev_start' was declared here
    int  f, i, j, n, rev_start;
                     ^~~~~~~~~
glimmer3.cc:3442:29: warning: 'prev_score' may be used uninitialized in this function [-Wmaybe-uninitialized]
            gene . Set_Score (prev_score - p -> score);
            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
glimmer3.cc:3411:12: note: 'prev_score' was declared here
    double  prev_score;
            ^~~~~~~~~~
glimmer3.cc:940:43: warning: 'orf_stop' may be used uninitialized in this function [-Wmaybe-uninitialized]
                      orf . Set_Orf_Len (i - orf_stop - 4);
                                         ~~^~~~~~~~~~
glimmer3.cc:907:24: note: 'orf_stop' was declared here
            int  which, orf_stop;
                        ^~~~~~~~
glimmer3.cc:896:12: warning: 'ignore_ct' may be used uninitialized in this function [-Wmaybe-uninitialized]
            if  (ignore_sub >= ignore_ct)
            ^~
glimmer3.cc:830:9: note: 'ignore_ct' was declared here
    int  ignore_ct;
         ^~~~~~~~~
@@@@@@@@@@@@@@@@@@@  long-orfs.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e long-orfs.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/long-orfs.o long-orfs.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" long-orfs.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
long-orfs.cc: In function 'void Find_Orfs(std::vector<Orf_t>&)':
long-orfs.cc:585:9: warning: variable 'first_fwd_stop' set but not used [-Wunused-but-set-variable]
    int  first_fwd_stop [3] = {0};
         ^~~~~~~~~~~~~~
long-orfs.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
long-orfs.cc:1317:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
long-orfs.cc: In function 'int main(int, char**)':
long-orfs.cc:655:12: warning: 'ignore_ct' may be used uninitialized in this function [-Wmaybe-uninitialized]
            if  (ignore_sub >= ignore_ct)
            ^~
long-orfs.cc:590:9: note: 'ignore_ct' was declared here
    int  ignore_ct;
         ^~~~~~~~~
@@@@@@@@@@@@@@@@@@@  test.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e test.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/test.o test.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" test.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
++++++++++++++++++++  anomaly ++++++++++++++++++++++
if [ -z "anomaly.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/anomaly -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib anomaly.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/anomaly; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/anomaly -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib anomaly.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/anomaly; fi; \
fi ;
++++++++++++++++++++  glimmer3 ++++++++++++++++++++++
if [ -z "glimmer3.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/glimmer3 -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib glimmer3.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a /builddir/build/BUILD/glimmer3.02/lib/libGLMicm.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/glimmer3; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/glimmer3 -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib glimmer3.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a /builddir/build/BUILD/glimmer3.02/lib/libGLMicm.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/glimmer3; fi; \
fi ;
++++++++++++++++++++  long-orfs ++++++++++++++++++++++
if [ -z "long-orfs.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/long-orfs -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib long-orfs.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/long-orfs; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/long-orfs -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib long-orfs.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/long-orfs; fi; \
fi ;
++++++++++++++++++++  test ++++++++++++++++++++++
if [ -z "test.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/test -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib test.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/test; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/test -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib test.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/test; fi; \
fi ;
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Util   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Util'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
if [ -e window-acgt.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc window-acgt.cc \
    | sed '\''s/window-acgt\\.o[ :]*/& window-acgt.d/g'\'' > window-acgt.d' ; \
        fi ;
if [ -e uncovered.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc uncovered.cc \
    | sed '\''s/uncovered\\.o[ :]*/& uncovered.d/g'\'' > uncovered.d' ; \
        fi ;
if [ -e start-codon-distrib.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc start-codon-distrib.cc \
    | sed '\''s/start-codon-distrib\\.o[ :]*/& start-codon-distrib.d/g'\'' > start-codon-distrib.d' ; \
        fi ;
if [ -e multi-extract.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc multi-extract.cc \
    | sed '\''s/multi-extract\\.o[ :]*/& multi-extract.d/g'\'' > multi-extract.d' ; \
        fi ;
if [ -e extract.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc extract.cc \
    | sed '\''s/extract\\.o[ :]*/& extract.d/g'\'' > extract.d' ; \
        fi ;
if [ -e entropy-score.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc entropy-score.cc \
    | sed '\''s/entropy-score\\.o[ :]*/& entropy-score.d/g'\'' > entropy-score.d' ; \
        fi ;
if [ -e entropy-profile.cc ] ; then \
  /bin/sh -ec 'g++ -M   -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc entropy-profile.cc \
    | sed '\''s/entropy-profile\\.o[ :]*/& entropy-profile.d/g'\'' > entropy-profile.d' ; \
        fi ;
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
@@@@@@@@@@@@@@@@@@@  entropy-profile.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e entropy-profile.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/entropy-profile.o entropy-profile.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" entropy-profile.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  entropy-score.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e entropy-score.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/entropy-score.o entropy-score.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" entropy-score.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
entropy-score.cc: In function 'int main(int, char**)':
entropy-score.cc:157:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation]
       if  (line [n - 1] == '\n');
       ^~
entropy-score.cc:158:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if'
           line [n - 1] = '\0';
           ^~~~
entropy-score.cc: In function 'void Read_Entropy_Profiles(const char*, bool&)':
entropy-score.cc:327:10: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
    fgets (line, MAX_LINE, fp);  // skip header line
    ~~~~~~^~~~~~~~~~~~~~~~~~~~
@@@@@@@@@@@@@@@@@@@  extract.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e extract.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/extract.o extract.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" extract.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  multi-extract.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e multi-extract.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/multi-extract.o multi-extract.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" multi-extract.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  start-codon-distrib.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e start-codon-distrib.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/start-codon-distrib.o start-codon-distrib.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" start-codon-distrib.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  uncovered.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e uncovered.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/uncovered.o uncovered.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" uncovered.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
@@@@@@@@@@@@@@@@@@@  window-acgt.cc @@@@@@@@@@@@@@@@@@@@@
if [ -e window-acgt.cc ] ; then \
  g++  -D__cplusplus -O2 -g -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -fexceptions -fstack-protector-strong -grecord-gcc-switches -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1  -c \
	 -I/builddir/build/BUILD/glimmer3.02/inc  -I/../SYS/inc  -I/builddir/build/BUILD/glimmer3.02/src/Common  -I/builddir/build/BUILD/glimmer3.02/src/ICM  -I/builddir/build/BUILD/glimmer3.02/src/Glimmer  -I/builddir/build/BUILD/glimmer3.02/src/Util  -I/builddir/build/BUILD/glimmer3.02/inc -o /builddir/build/BUILD/glimmer3.02/obj/window-acgt.o window-acgt.cc ; \
else \
  /cm/cmtools/bin/links.pl /builddir/build/BUILD/glimmer3.02/obj \
            " :/builddir/build/BUILD/glimmer3.02/obj" window-acgt.o ; \
fi ;
<command-line>:0:0: warning: "__cplusplus" redefined
<built-in>: note: this is the location of the previous definition
++++++++++++++++++++  entropy-profile ++++++++++++++++++++++
if [ -z "entropy-profile.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/entropy-profile -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-profile.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/entropy-profile; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/entropy-profile -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-profile.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/entropy-profile; fi; \
fi ;
++++++++++++++++++++  entropy-score ++++++++++++++++++++++
if [ -z "entropy-score.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/entropy-score -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-score.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/entropy-score; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/entropy-score -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib entropy-score.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/entropy-score; fi; \
fi ;
++++++++++++++++++++  extract ++++++++++++++++++++++
if [ -z "extract.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/extract -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib extract.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/extract; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/extract -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib extract.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/extract; fi; \
fi ;
++++++++++++++++++++  multi-extract ++++++++++++++++++++++
if [ -z "multi-extract.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/multi-extract -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib multi-extract.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/multi-extract; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/multi-extract -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib multi-extract.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/multi-extract; fi; \
fi ;
++++++++++++++++++++  start-codon-distrib ++++++++++++++++++++++
if [ -z "start-codon-distrib.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/start-codon-distrib -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib start-codon-distrib.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/start-codon-distrib; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/start-codon-distrib -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib start-codon-distrib.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/start-codon-distrib; fi; \
fi ;
++++++++++++++++++++  uncovered ++++++++++++++++++++++
if [ -z "uncovered.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/uncovered -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib uncovered.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/uncovered; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/uncovered -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib uncovered.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/uncovered; fi; \
fi ;
++++++++++++++++++++  window-acgt ++++++++++++++++++++++
if [ -z "window-acgt.o" ] ; then \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if cc -o /builddir/build/BUILD/glimmer3.02/bin/window-acgt -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib window-acgt.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/window-acgt; fi; \
else \
  cd /builddir/build/BUILD/glimmer3.02/obj; \
    if g++ -o /builddir/build/BUILD/glimmer3.02/bin/window-acgt -g -lm \
                -L/builddir/build/BUILD/glimmer3.02/lib  -L/builddir/build/BUILD/glimmer3.02/lib  -L/usr/lib  -L/usr/shlib  -L/usr/X11R6/lib  -L/lib window-acgt.o /builddir/build/BUILD/glimmer3.02/lib/libGLMcommon.a \
        ; then \
		true; else rm -f /builddir/build/BUILD/glimmer3.02/bin/window-acgt; fi; \
fi ;
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Util'
* Make Target is  all
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Common   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Common'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Common'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/ICM   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Glimmer   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Util   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Util'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Util'
* Make Target is  all
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Common   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Common'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Common'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/ICM   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/ICM'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Glimmer   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Glimmer'
#####    Making Directory  /builddir/build/BUILD/glimmer3.02/src/Util   all  #####
make[1]: Entering directory '/builddir/build/BUILD/glimmer3.02/src/Util'
make[1]: warning: jobserver unavailable: using -j1.  Add '+' to parent make rule.
make[1]: Nothing to be done for 'all'.
make[1]: Leaving directory '/builddir/build/BUILD/glimmer3.02/src/Util'
make: Leaving directory '/builddir/build/BUILD/glimmer3.02/src'
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.q2D85x
+ umask 022
+ cd /builddir/build/BUILD
+ '[' /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64 '!=' / ']'
+ rm -rf /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
++ dirname /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
+ mkdir -p /builddir/build/BUILDROOT
+ mkdir /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
+ cd glimmer3.02
+ rm -rf /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
+ mkdir -p /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/libexec/glimmer3
+ mkdir -p /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/glimmer3
+ mkdir -p /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/bin
+ install -m 755 scripts/g3-from-scratch.csh scripts/g3-from-training.csh scripts/g3-iterated.csh /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64//usr/bin
+ install -m 755 bin/anomaly bin/build-fixed bin/build-icm bin/entropy-profile bin/entropy-score bin/extract bin/glimmer3 bin/long-orfs bin/multi-extract bin/score-fixed bin/start-codon-distrib bin/uncovered bin/window-acgt /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/libexec/glimmer3
+ install -m 755 scripts/get-motif-counts.awk scripts/glim-diff.awk scripts/match-list-col.awk scripts/not-acgt.awk scripts/upstream-coords.awk /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/glimmer3
+ ln -s ../libexec/glimmer3/glimmer3 /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64//usr/bin/glimmer3
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
/sbin/ldconfig: Warning: ignoring configuration file that cannot be opened: /etc/ld.so.conf: No such file or directory
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip /usr/bin/strip
+ /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip
+ /usr/lib/rpm/brp-python-bytecompile /usr/bin/python 1
+ /usr/lib/rpm/brp-python-hardlink
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
Processing files: glimmer-3.02b-10.fc28.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.K0Raw4
+ umask 022
+ cd /builddir/build/BUILD
+ cd glimmer3.02
+ DOCDIR=/builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/doc/glimmer
+ export LC_ALL=C
+ LC_ALL=C
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/doc/glimmer
+ cp -pr LICENSE /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/doc/glimmer
+ cp -pr glim302notes.pdf /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/doc/glimmer
+ cp -pr sample-run /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64/usr/share/doc/glimmer
+ exit 0
Provides: glimmer = 3.02b-10.fc28 glimmer(riscv-64) = 3.02b-10.fc28
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /bin/awk /bin/csh ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libgcc_s.so.1(GCC_3.4)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(CXXABI_1.3.8)(64bit) libstdc++.so.6(CXXABI_1.3.9)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) rtld(GNU_HASH)
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
Wrote: /builddir/build/SRPMS/glimmer-3.02b-10.fc28.src.rpm
Wrote: /builddir/build/RPMS/riscv64/glimmer-3.02b-10.fc28.riscv64.rpm
Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.5CgoN5
+ umask 022
+ cd /builddir/build/BUILD
+ cd glimmer3.02
+ rm -rf /builddir/build/BUILDROOT/glimmer-3.02b-10.fc28.riscv64
+ exit 0
+ touch /buildok
+ cleanup
+ set +e
+ sync
+ sleep 5
+ sync
+ poweroff
Terminated
++ cleanup
++ set +e
++ sync
Terminated
+++ cleanup
+++ set +e
+++ sync
+++ sleep 5
+++ sync
+++ poweroff