This brings /etc/dirsrv/slapd-REALM/certmap.conf under IPA control.
The file is overwritten on upgrades.

This ensures that the cert for the ipaca user is recognized when
ipa-ca-install is run on older masters.

New servers that are installed with dogtag 10 instances will use
a single database instance for dogtag and IPA, albeit with different
suffixes.  Dogtag will communicate with the instance through a
database user with permissions to modify the dogtag  suffix only.
This user will authenticate using client auth using the subsystem cert
for the instance.

This patch includes changes to allow the creation of masters and clones
with single ds instances.

% git log --follow -- <file>

renamed: ipa-server/autogen.sh -> autogen.sh
renamed: ipa-server/ipa-kpasswd/Makefile.am -> daemons/ipa-kpasswd/Makefile.am
renamed: ipa-server/ipa-kpasswd/README -> daemons/ipa-kpasswd/README
renamed: ipa-server/ipa-kpasswd/ipa_kpasswd.c -> daemons/ipa-kpasswd/ipa_kpasswd.c
renamed: ipa-server/ipa-kpasswd/ipa_kpasswd.init -> daemons/ipa-kpasswd/ipa_kpasswd.init
renamed: ipa-server/ipa-slapi-plugins/Makefile.am -> daemons/ipa-slapi-plugins/Makefile.am
renamed: ipa-server/ipa-slapi-plugins/README -> daemons/ipa-slapi-plugins/README
renamed: ipa-server/ipa-slapi-plugins/dna/Makefile.am -> daemons/ipa-slapi-plugins/dna/Makefile.am
renamed: ipa-server/ipa-slapi-plugins/dna/dna-conf.ldif -> daemons/ipa-slapi-plugins/dna/dna-conf.ldif
renamed: ipa-server/ipa-slapi-plugins/dna/dna.c -> daemons/ipa-slapi-plugins/dna/dna.c
renamed: ipa-server/ipa-slapi-plugins/ipa-memberof/Makefile.am -> daemons/ipa-slapi-plugins/ipa-memberof/Makefile.am
renamed: ipa-server/ipa-slapi-plugins/ipa-memberof/ipa-memberof.c -> daemons/ipa-slapi-plugins/ipa-memberof/ipa-memberof.c
renamed: ipa-server/ipa-slapi-plugins/ipa-memberof/ipa-memberof.h -> daemons/ipa-slapi-plugins/ipa-memberof/ipa-memberof.h
renamed: ipa-server/ipa-slapi-plugins/ipa-memberof/ipa-memberof_config.c -> daemons/ipa-slapi-plugins/ipa-memberof/ipa-memberof_config.c
renamed: ipa-server/ipa-slapi-plugins/ipa-memberof/memberof-conf.ldif -> daemons/ipa-slapi-plugins/ipa-memberof/memberof-conf.ldif
renamed: ipa-server/ipa-slapi-plugins/ipa-pwd-extop/Makefile.am -> daemons/ipa-slapi-plugins/ipa-pwd-extop/Makefile.am
renamed: ipa-server/ipa-slapi-plugins/ipa-pwd-extop/README -> daemons/ipa-slapi-plugins/ipa-pwd-extop/README
renamed: ipa-server/ipa-slapi-plugins/ipa-pwd-extop/ipa_pwd_extop.c -> daemons/ipa-slapi-plugins/ipa-pwd-extop/ipa_pwd_extop.c
renamed: ipa-server/ipa-slapi-plugins/ipa-pwd-extop/pwd-extop-conf.ldif -> daemons/ipa-slapi-plugins/ipa-pwd-extop/pwd-extop-conf.ldif
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/Makefile.am -> daemons/ipa-slapi-plugins/ipa-winsync/Makefile.am
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/README -> daemons/ipa-slapi-plugins/ipa-winsync/README
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/ipa-winsync-conf.ldif -> daemons/ipa-slapi-plugins/ipa-winsync/ipa-winsync-conf.ldif
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/ipa-winsync-config.c -> daemons/ipa-slapi-plugins/ipa-winsync/ipa-winsync-config.c
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/ipa-winsync.c -> daemons/ipa-slapi-plugins/ipa-winsync/ipa-winsync.c
renamed: ipa-server/ipa-slapi-plugins/ipa-winsync/ipa-winsync.h -> daemons/ipa-slapi-plugins/ipa-winsync/ipa-winsync.h
renamed: ipa-server/xmlrpc-server/ipa-rewrite.conf -> install/conf/ipa-rewrite.conf
renamed: ipa-server/xmlrpc-server/ipa.conf -> install/conf/ipa.conf
renamed: ipa-server/xmlrpc-server/ssbrowser.html -> install/html/ssbrowser.html
renamed: ipa-server/xmlrpc-server/unauthorized.html -> install/html/unauthorized.html
renamed: ipa-server/ipa-install/share/60ipaconfig.ldif -> install/share/60ipaconfig.ldif
renamed: ipa-server/ipa-install/share/60kerberos.ldif -> install/share/60kerberos.ldif
renamed: ipa-server/ipa-install/share/60radius.ldif -> install/share/60radius.ldif
renamed: ipa-server/ipa-install/share/60samba.ldif -> install/share/60samba.ldif
renamed: ipa-server/ipa-install/share/Makefile.am -> install/share/Makefile.am
renamed: ipa-server/ipa-install/share/bind.named.conf.template -> install/share/bind.named.conf.template
renamed: ipa-server/ipa-install/share/bind.zone.db.template -> install/share/bind.zone.db.template
renamed: ipa-server/ipa-install/share/bootstrap-template.ldif -> install/share/bootstrap-template.ldif
renamed: ipa-server/ipa-install/share/certmap.conf.template -> install/share/certmap.conf.template
renamed: ipa-server/ipa-install/share/default-aci.ldif -> install/share/default-aci.ldif
renamed: ipa-server/ipa-install/share/default-keytypes.ldif -> install/share/default-keytypes.ldif
renamed: ipa-server/ipa-install/share/dna-posix.ldif -> install/share/dna-posix.ldif
renamed: ipa-server/ipa-install/share/encrypted_attribute.ldif -> install/share/encrypted_attribute.ldif
renamed: ipa-server/ipa-install/share/fedora-ds.init.patch -> install/share/fedora-ds.init.patch
renamed: ipa-server/ipa-install/share/indices.ldif -> install/share/indices.ldif
renamed: ipa-server/ipa-install/share/kdc.conf.template -> install/share/kdc.conf.template
renamed: ipa-server/ipa-install/share/kerberos.ldif -> install/share/kerberos.ldif
renamed: ipa-server/ipa-install/share/krb.con.template -> install/share/krb.con.template
renamed: ipa-server/ipa-install/share/krb5.conf.template -> install/share/krb5.conf.template
renamed: ipa-server/ipa-install/share/krb5.ini.template -> install/share/krb5.ini.template
renamed: ipa-server/ipa-install/share/krbrealm.con.template -> install/share/krbrealm.con.template
renamed: ipa-server/ipa-install/share/master-entry.ldif -> install/share/master-entry.ldif
renamed: ipa-server/ipa-install/share/memberof-task.ldif -> install/share/memberof-task.ldif
renamed: ipa-server/ipa-install/share/ntp.conf.server.template -> install/share/ntp.conf.server.template
renamed: ipa-server/ipa-install/share/ntpd.sysconfig.template -> install/share/ntpd.sysconfig.template
renamed: ipa-server/ipa-install/share/preferences.html.template -> install/share/preferences.html.template
renamed: ipa-server/ipa-install/share/referint-conf.ldif -> install/share/referint-conf.ldif
renamed: ipa-server/ipa-install/share/schema_compat.uldif -> install/share/schema_compat.uldif
renamed: ipa-server/ipa-install/share/unique-attributes.ldif -> install/share/unique-attributes.ldif
renamed: ipa-server/ipa-install/Makefile.am -> install/tools/Makefile.am
renamed: ipa-server/ipa-install/README -> install/tools/README
renamed: ipa-server/ipa-compat-manage -> install/tools/ipa-compat-manage
renamed: ipa-server/ipa-fix-CVE-2008-3274 -> install/tools/ipa-fix-CVE-2008-3274
renamed: ipa-server/ipa-ldap-updater -> install/tools/ipa-ldap-updater
renamed: ipa-server/ipa-install/ipa-replica-install -> install/tools/ipa-replica-install
renamed: ipa-server/ipa-install/ipa-replica-manage -> install/tools/ipa-replica-manage
renamed: ipa-server/ipa-install/ipa-replica-prepare -> install/tools/ipa-replica-prepare
renamed: ipa-server/ipa-install/ipa-server-certinstall -> install/tools/ipa-server-certinstall
renamed: ipa-server/ipa-install/ipa-server-install -> install/tools/ipa-server-install
renamed: ipa-server/ipa-upgradeconfig -> install/tools/ipa-upgradeconfig
renamed: ipa-server/ipa-install/ipactl -> install/tools/ipactl
renamed: ipa-server/man/Makefile.am -> install/tools/man/Makefile.am
renamed: ipa-server/man/ipa-compat-manage.1 -> install/tools/man/ipa-compat-manage.1
renamed: ipa-server/man/ipa-ldap-updater.1 -> install/tools/man/ipa-ldap-updater.1
renamed: ipa-server/man/ipa-replica-install.1 -> install/tools/man/ipa-replica-install.1
renamed: ipa-server/man/ipa-replica-manage.1 -> install/tools/man/ipa-replica-manage.1
renamed: ipa-server/man/ipa-replica-prepare.1 -> install/tools/man/ipa-replica-prepare.1
renamed: ipa-server/man/ipa-server-certinstall.1 -> install/tools/man/ipa-server-certinstall.1
renamed: ipa-server/man/ipa-server-install.1 -> install/tools/man/ipa-server-install.1
renamed: ipa-server/man/ipa_kpasswd.8 -> install/tools/man/ipa_kpasswd.8
renamed: ipa-server/man/ipa_webgui.8 -> install/tools/man/ipa_webgui.8
renamed: ipa-server/man/ipactl.8 -> install/tools/man/ipactl.8
renamed: ipa-server/ipa-install/updates/Makefile.am -> install/updates/Makefile.am
renamed: ipa-server/ipa-install/updates/RFC2307bis.update -> install/updates/RFC2307bis.update
renamed: ipa-server/ipa-install/updates/RFC4876.update -> install/updates/RFC4876.update
renamed: ipa-server/ipa-install/updates/indices.update -> install/updates/indices.update
renamed: ipa-server/ipa-install/updates/nss_ldap.update -> install/updates/nss_ldap.update
renamed: ipa-server/ipa-install/updates/replication.update -> install/updates/replication.update
renamed: ipa-server/ipa-install/updates/winsync_index.update -> install/updates/winsync_index.update
renamed: ipa-server/ipaserver/Makefile.am -> ipaserver/install/Makefile.am
renamed: ipa-server/ipaserver/__init__.py -> ipaserver/install/__init__.py
renamed: ipa-server/ipaserver/bindinstance.py -> ipaserver/install/bindinstance.py
renamed: ipa-server/ipaserver/certs.py -> ipaserver/install/certs.py
renamed: ipa-server/ipaserver/dsinstance.py -> ipaserver/install/dsinstance.py
renamed: ipa-server/ipaserver/httpinstance.py -> ipaserver/install/httpinstance.py
renamed: ipa-server/ipaserver/installutils.py -> ipaserver/install/installutils.py
renamed: ipa-server/ipaserver/ipaldap.py -> ipaserver/install/ipaldap.py
renamed: ipa-server/ipaserver/krbinstance.py -> ipaserver/install/krbinstance.py
renamed: ipa-server/ipaserver/ldapupdate.py -> ipaserver/install/ldapupdate.py
renamed: ipa-server/ipaserver/ntpinstance.py -> ipaserver/install/ntpinstance.py
renamed: ipa-server/ipaserver/replication.py -> ipaserver/install/replication.py
renamed: ipa-server/ipaserver/service.py -> ipaserver/install/service.py
renamed: ipa-server/selinux/Makefile -> selinux/Makefile
renamed: ipa-server/selinux/ipa-server-selinux.spec.in -> selinux/ipa-server-selinux.spec.in
renamed: ipa-server/selinux/ipa_kpasswd/ipa_kpasswd.fc -> selinux/ipa_kpasswd/ipa_kpasswd.fc
renamed: ipa-server/selinux/ipa_kpasswd/ipa_kpasswd.te -> selinux/ipa_kpasswd/ipa_kpasswd.te
renamed: ipa-server/selinux/ipa_webgui/ipa_webgui.fc -> selinux/ipa_webgui/ipa_webgui.fc
renamed: ipa-server/selinux/ipa_webgui/ipa_webgui.te -> selinux/ipa_webgui/ipa_webgui.te
renamed: ipa-server/version.m4.in -> version.m4.in