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Now that we can setup GSSAPI authenticated replication we are not
tied to use the Directory Manager password to set up replication
agreements.
Fixes: https://fedorahosted.org/freeipa/ticket/644
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ticket 638
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These commands can now be run exclusively o the replica that needs to be
resynced or reinitialized and the --from command must be used to tell from
which other replica it can will pull data.
Fixes: https://fedorahosted.org/freeipa/ticket/626
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Part of this fix requires also giving proper permission to change the
replication agreements root.
While there also fix replica-related permissions to have the classic
add/modify/remove triplet of permissions.
Fixes: https://fedorahosted.org/freeipa/ticket/630
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Fixes: https://fedorahosted.org/freeipa/ticket/617
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